| Department of Veterinary Disease Biology | Faculty of Life Sciences | University of Copenhagen | Denmark | |
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Applied Bioinformatics
Population genetics Evolution of bacteria |
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Information science has been applied to biology to produce the field called Bioinformatics. Hundreds of bacterial genomes, as well many eukaryotes have been fully sequenced and the information stored in databases such as GenBank and EMBL. Further storage, organization and indexing of sequence information are also part of Bioinformatics. Computational Biology is the name given to the analysis of sequence information and it involves the following:
Evolution has
produced DNA sequences that encode proteins with very specific functions. It
is possible to predict the three-dimensional structure of a protein using
algorithms derived from our knowledge of physics, chemistry
and most importantly, from the analysis of other proteins with similar amino
acid sequences.
A
population is a part of a
species including organisms with common properties at a given time and usually geographic place.
Population genetics applies both to how the mechanisms (mutation, migration, natural selection, genetic drift) influence the evolutionary rate of change in the populations as well as a historical investigation of when pathogens have evolved. Population genetic investigations determine
population structures, the nature of allelic variation and the role of
different modes of recombination in generating genotypic variation.
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Simplified 16S rRNA gene sequence based phylogeny of genera, species and species-like taxa of Pasteurellaceae
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| Databases and sequencing | ||||
| Pairwise Alignment | ||||
| Multiple Alignment | ||||
| Phylogeny | ||||
| Protein Structure | ||||
| Primer Design | ||||
| Genomics | ||||
| Identification of microorganisms and proteins | ||||
| Data and exercises | ||||
| Population genetics | ||||
| Pasteurellaceae | ||||
| Projects | ||||