Henrik Christensen profile
Department of Veterinary Disease Biology Faculty of Life Sciences University of Copenhagen Denmark
Applied Bioinformatics
Population genetics
Evolution of bacteria
 

Information science has been applied to biology to produce the field called Bioinformatics. Hundreds of bacterial genomes, as well many eukaryotes  have been fully sequenced and the information stored in databases such as GenBank and EMBL. Further storage, organization and indexing of sequence information are also part of Bioinformatics.

Computational Biology is the name given to the analysis of sequence information and it involves the following:

  • Finding the genes in the DNA sequences of various organisms

  • Developing methods to predict the structure and/or function of newly discovered proteins and structural RNA sequences

  • Clustering protein sequences into families of related sequences and the development of protein models

  • Aligning similar proteins and generating phylogenetic trees to examine evolutionary relationships

Evolution has produced DNA sequences that encode proteins with very specific functions. It is possible to predict the three-dimensional structure of a protein using algorithms derived from our knowledge of physics, chemistry and most importantly, from the analysis of other proteins with similar amino acid sequences.

A population is a part of a species including organisms with common properties at a given time and usually geographic place.

Population genetics is the study of evolutionary change in the genetic composition of populations.


Population genetics applies both to how the mechanisms (mutation, migration, natural selection, genetic drift) influence the evolutionary rate of change in the populations as well as a historical investigation of when pathogens have evolved.


Population genetic investigations determine population structures, the nature of allelic variation and the role of different modes of recombination in generating genotypic variation.





This site is maintained by Henrik Christensen to present teaching and research activities. I can be contacted by email: hech [at] life.ku.dk

 

Simplified 16S rRNA gene sequence based phylogeny of genera, species and species-like taxa of Pasteurellaceae

Databases and sequencing
 
Pairwise Alignment
 
Multiple Alignment
 
Phylogeny
 
Protein Structure
 
Primer Design
 
Genomics
 
Identification of microorganisms and proteins
 
Data and exercises
Population genetics
 
 
Pasteurellaceae
 
Projects